# Repertoire: residues # Frequencies Filter: true # Print Homology: true # Print Ruler: true # Number of Columns: 693 # Number of Sequences: 4 # Status: 0 # Threshold to Show Word: 0.01 # Threshold to Uppercase Word: 0.9 # Width: 80 # Word Size: 1 # Word Classes Count: 22 # Word Class[0]: "a" # Word Class[1]: "b" # Word Class[2]: "c" # Word Class[3]: "d" # Word Class[4]: "e" # Word Class[5]: "f" # Word Class[6]: "g" # Word Class[7]: "h" # Word Class[8]: "i" # Word Class[9]: "k" # Word Class[10]: "l" # Word Class[11]: "m" # Word Class[12]: "n" # Word Class[13]: "o" # Word Class[14]: "r" # Word Class[15]: "s" # Word Class[16]: "t" # Word Class[17]: "u" # Word Class[18]: "v" # Word Class[19]: "w" # Word Class[20]: "y" # Word Class[21]: "-" # Used Command: -c 1 -f 0.010000 -i /pbil/db/bcl2db/workdir/MB2VsDTNn9sfl0R/data/GenerateBCL2Dataset_bB7KKoA0KSte/data/nucleic/fasta/BCP/Metazoa/CLASSBH3/Oryzias-latipes_BAD.clu -l -r -t 0 -z 0.900000 -s 0 D 10 20 30 40 50 60 70 80 S ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| H ******************************************************************************** R ATGGCAGCAAAGTTCACCATCTCAGACGATTCGGAGTCATCCGAGGAGGTAGAGGGAGGAAAACTTGACCTGGGAGCGGC R R D 90 100 110 120 130 140 150 160 S ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| H ** ****************************************** ************************* R ---------AGcAGGAGGAGAAGGGGAGCACCTTCATGATCGACATTCCCTCACcCTGCCAGAGCTTCGACTCACAAGTA R aggaggagg g a R D 170 180 190 200 210 220 230 240 S ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| H ******************************************************************************** R ACGGGCGTACCAGGCTGAATTCAGAGTCCACCGCTTCCACGTACTCCAGAGATGAGGACCTCGCGCGGGAAGACGAGGCC R R D 250 260 270 280 290 300 310 320 S ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| H ************************************** ***************** *********************** R GGAACCCCCACTGATGGGTTGGCCTTCAGGGGCAGATCcAAGTCGGCCCCTCCGGCcCTGTGGGCCGCCAAAAAGTACGG R t t R D 330 340 350 360 370 380 390 400 S ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| H ******************** ********************************************************** R cCAGCAGCTCCGACGGATGAGtGACGAGTTTGACAGCCTGCTGGATAAAGGGGAGATGAGGAAGGTGAGGAGCACTGGGG R t c R D 410 420 430 440 450 460 470 480 S ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| H ************************************************************* ****************** R CGGCCAAACAGATGCTCCACTCCACGAGCTGGTGGAACTACCTCTTCAGCCACCCGGAGGCgGAAGGAGAGTACAGCCAC R a R D 490 500 510 520 530 540 550 560 S ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| H *********** ********* R CACGAGAGCCAcCGCACTGAG----------------------------------------------------------- R a aacagagaccttctggggtggttgcgttgttcttcggacattacggtcagccatgtcac R D 570 580 590 600 610 620 630 640 S ....:....|....:....|....:....|....:....|....:....|....:....|....:....|....:....| H R -------------------------------------------------------------------------------- R tgcaggctttcagcttccctttaccagaaactcgttatttcagggctggtggtttgatctaccagttcaagatcagagga R D 650 660 670 680 690 S ....:....|....:....|....:....|....:....|....:....|... H * * R --------------------------------------------------TgA R ggcagcaacttcagggaagacagaactttctagaaccttcaattagaact a R ac